Following departments has been established and functioning as per guideline of NCISM.
- Department of Rachana Shariram (Anatomy)
- Department of Kriya Shariram (Physiology)
- Department of Maulika Siddhanta (Basic Principles of Ayurveda)
- Department of Dravyaguna (Ayurvedic Pharmacology)
- Department of Ras-shastra and Bhaishajya Kalpana (Medicinal Chemistry and Pharmacy)
- Department of Roga-nidan & Vikrithi-vijnana (Pathology)
- Department of Swastha-vrittam & Yoga (Social and Preventative Medicine & Yoga)
- Department of Agada-tantra and Vyavahar-ayurveda (Toxicology, Jurisprudence and Forensic Medicine)
- Kaumarabhritya (Paediatrics)
- Stri-roga & Prasuti-tantra (Gynecology & Obstetrics)
- Department of Kayachikitsa (General Medicine)
- Department of Panchakarma
- Department of Shalya Tantra (Surgery)
- Department of Shalakya-tantra (ENT, Dentistry and Ophthalmology)
Following departments is planned to be functioning in step by step manner as per guideline of NCISM.